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Antimicrobial Agents and Chemotherapy, March 2007, p. 1064-1070, Vol. 51, No. 3
0066-4804/07/$08.00+0 doi:10.1128/AAC.01012-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Biology, Loyola University Chicago, Chicago, Illinois,1 Department of Medical Microbiology, University of Nijmegen, Nijmegen, The Netherlands2
Received 13 August 2006/ Returned for modification 24 September 2006/ Accepted 6 December 2006
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Both asexual and sexual stage parasites are present concurrently in an infected individual and therefore would both be exposed to antimalarial drugs. However, gametocytes have been found to be resistant to many of the commonly used antimalarials, such as the 4-aminoquinolines; and sulfadoxine-pyrimethamine has been reported to increase the production of gametocytes, which could enhance transmission (2, 12, 21, 36). Consequently, even after successful treatment for clinical symptoms, an individual can still transmit the malaria parasite for at least a week. Therefore, it is important to develop therapeutic agents that effectively inhibit both asexual and sexual stage parasites.
Cysteine proteases are currently being developed as drugs that target asexual parasites (27). Treatment of trophozoites with specific cysteine protease inhibitors, such as E64, peptidyl fluoromethyl ketones (FMKs), and peptidyl vinyl sulfones (VSs), block hemoglobin digestion, causing distension of the food vacuole and inhibition of schizont production (25, 30, 34). Cysteine protease inhibitors have also been shown to interfere with, but not completely block, merozoite release and to inhibit P. berghei and P. falciparum sporozoite invasion (4, 28, 37). Membrane-permeant E64d has also been shown to inhibit the processing of the 360-kDa P. falciparum gametocyte surface antigen Pfs230 to 35-kDa and 300-kDa fragments during gametogenesis, while the production of the 47-kDa and the 307-kDa fragments is not affected. When the parasite emerges from the red blood cell (RBC) as a gamete in the mosquito midgut, 35-kDa and 47-kDa sections of the first 555 amino acids (aa) of Pfs230, which includes the immunodominant glutamate-rich repeat domains, are released as soluble fragments (3, 24). In contrast, the 300-kDa and 307-kDa fragments remain associated with the gamete surface and are the targets of malaria parasite transmission-blocking monoclonal antibodies (3, 38).
Four papain-like cysteine proteases have been identified in the P. falciparum genome and have been named falcipains 1, 2A, 2B, and 3 (18, 27). The gene for falcipain 1 was cloned first, and although it is expressed in asexual parasites, mRNA levels have been found to increase during sexual differentiation (8, 26). Indeed, targeted gene disruption does not affect asexual growth but significantly decreases oocyst production (8). Falcipains 2A and 2B share 97% amino acid identity and therefore are difficult to differentiate with immunological reagents (18). By using specific oligonucleotide probes, falcipain 2B mRNA was found to be expressed at a lower level than falcipain 2A. However, falcipains 2A and 2B have similar time courses of expression and their expression peaks at the late trophozoite stage, which suggests that the two falcipain 2 genes may have similar roles (35). Falcipains 2A and 3 have been proposed to be involved in hemoglobin digestion, since they have been located in the food vacuole and the corresponding recombinant proteins have acidic pH maxima and can degrade denatured hemoglobin (31, 34). Additionally, targeted disruption of the falcipain 2A gene was recently reported to cause distention of the food vacuole in trophozoites (33). This phenotype is similar to that induced by treatment with cysteine protease inhibitor E64. The disruption of falcipain 2B had no detectable effect on the food vacuole or asexual growth (32). In contrast, the disruption of falcipain 3 has not been reported, although it has been attempted by our group and other investigators (32). This could indicate that falcipain 3 is essential for asexual growth, as would be expected for a gene that is required for the digestion of hemoglobin, which is a major source of nutrition for asexual parasites and very early gametocytes.
Although the protein expression patterns of falcipain 2A, 2B, and 3 have been well studied in asexual parasites, they have not been characterized in gametocytes. It has been reported that the rate of hemoglobin digestion decreases after day 4 of gametocytogenesis, which corresponds to early stage II, and that hemoglobin digestion may not be necessary for further sporogonic development (14). The work reported here found that falcipain 3 and not falcipain 2A or 2B was expressed throughout gametocytogenesis and was exported into the RBC during gametocyte maturation. Protease inhibitors were then used to evaluate the role of cysteine proteases in malaria parasite transmission and their potential as drug targets.
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Mosquito feeding assay. Cultures of P. falciparum parasites comprising isolate NF54 (Table 1) or; strain 3D7 (Table 1 [see also Fig. 4A]) and containing mature stage V gametocytes incubated with or without protease inhibitors (0.3 ml) were pelleted onto 150 µl packed erythrocytes (19). The supernatant was replaced with 120 µl of normal human serum containing active complement, mixed, and introduced into a water-jacketed membrane feeder maintained at 39°C (20). Anopheles stephensi (strain SxK Nij) mosquitoes were allowed to gorge for 10 min and were then grown for 7 more days at 26 ± 1°C and >80% ± 10% humidity. The midguts were then dissected and stained in 1.0% mercurochrome to visualize the P. falciparum oocysts (magnification, x100 to x200). The 3D7 feedings were performed at Loyola University Chicago, and the NF54 feedings were performed at the University of Nijmegen.
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TABLE 1. E64d-mediated inhibition of oocyst production
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FIG. 4. Effects of cysteine protease inhibitors on oocyst production and Pfs230 processing. (A) Feeding protease inhibitor-treated gametocytes to mosquitoes. Mature gametocytes of strain 3D7 were treated for 1 h with the indicated protease inhibitor, YA29, E64d, Mu-Leu-hPhe-VSPh (VSP), or Mu-Leu-hPhe-FMK (FMK), or DMSO alone before they were fed to Anopheles stephensi mosquitoes. Seven days later the midguts were dissected and analyzed for P. falciparum oocysts. For each independent feeding (11 to 22 mosquitoes per feeding), the average number of oocysts per midgut was calculated for each treatment and compared with the average number of oocysts per midgut of mosquitoes fed the control DMSO-treated gametocytes (percent oocyst reduction). *, significant difference (P 0.007) from the results for the DMSO-treated control by Kruskal-Wallis analysis. (B) Pfs230 processing during emergence following protease inhibitor treatment in the presence and absence of 0.001% saponin. Following a 1-h incubation in the presence or absence of 0.001% saponin with DMSO alone (D) or the indicated protease inhibitor, YA29 (Y), Mu-Leu-hPhe-VSPh (V), Mu-Leu-hPhe-FMK (F), 100 µM E64d (E), or 10 µM E64d (E10), mature gametocytes were pelleted and stimulated to emerge as described in Materials and Methods. The emergence medium was harvested, size fractionated, immunoblotted, and probed with Pfs230 region A (aa 304 to 378)-specific antibodies. The arrows indicate the 47-kDa and 35-kDa fragments.
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Immunoassays. (i) Immunoblotting. The protein expression patterns of falcipain 2A/B and 3 were tested with asexual P. falciparum parasites and throughout the induction and maturation of gametocytes (Fig. 1). Parasites from asexual stock cultures or parasites obtained at the indicated times (days 4 to 14) after the gametocyte cultures were set up were isolated by centrifugation (at 2,000 x g for 5 min) after RBC lysis with 0.015% saponin. The cell pellets were washed in phosphate-buffered saline (PBS) and then extracted in NETT (150 mM NaCl, 5 mM EDTA, 0.5% Triton X-100, 50 mM Tris-Cl [pH 6.8]). SDS sample buffer (final concentrations, 1% SDS, 10% glycerol, and 125 mM Tris-Cl [pH 6.8]) was added to the NETT parasite extract or directly to emergence medium which was isolated by centrifugation (at 2,000 x g for 5 min) 1 h after the induction of gamete/zygote formation. The sample was size fractionated on a 12% polyacrylamide gel (Invitrogen) and then transferred to nitrocellulose. The nitrocellulose blot was incubated with the indicated primary antibodies (1:1,000) and visualized with alkaline phosphatase-conjugated secondary antibodies (1:2,000; Sigma), 5-bromo-4-chloro-3-indolyl phosphate p-toluidine salt, and nitroblue tetrazolium chloride (Promega, Madison, WI).
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FIG. 1. Falcipain 2A/B and 3 expression. (A and B) Immunoblots of NETT extracts of parasites isolated from cultures containing (A) asexual parasites (Asex) or (B) parasites isolated on the indicated day were probed with anti-falcipain 2A/B (Fal 2)- or falcipain 3 (Fal 3)-specific antibodies, as described in Materials and Methods. n-Acetylglucosamine was added on day 8 to block further asexual growth, and the most abundant gametocyte stage (stages II to V) at each time point is indicated. (C) Immunofluorescence assay of a methanol-fixed schizont and stage V gametocyte probed with anti-falcipain 3 antibodies and DNA staining with DAPI. The merged anti-falcipain 3 and DAPI-stained DNA images and the corresponding bright-field (BF) image are shown.
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FIG. 2. Localization of falcipain 3 during gametocytogenesis by immunofluorescence assay of stage II, III, IV, and V P. falciparum gametocytes. The methanol-fixed gametocytes were probed with anti-falcipain 3 and anti-glycophorin A antibodies and tetramethylrhodamine isothiocyanate- or fluorescein isothiocyanate-labeled secondary antibodies. The bright-field (BF), anti-falcipain 3 (Fal 3), and merged anti-falcipain 3 and anti-glycophorin A (merge) images are shown.
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Importantly, treatment with 100 µM E64d for an hour did not affect the morphology of the gametocytes or their ability to respond to conditions that simulate the mosquito midgut (<30°C, pH 8.3, 100 µM xanthurenic acid) (Fig. 3). Both DMSO- and E64d-treated gametocytes rounded up and emerged from RBCs, and within 10 min, male gametocytes had completed three rounds of DNA replication and had begun to exflagellate. During exflagellation one male produced up to eight motile flagella. In addition, uninfected RBCs formed clusters around the main body of the exflagellating male, generating exflagellation centers (Fig. 3). The number of exflagellation centers per x40 field ranged from 0 to 3 for both the DMSO- and E64d-treated gametocytes. However, as shown previously (3), E64d treatment effectively inhibited the production of the 300-kDa and 35-kDa forms of gametocyte surface protein Pfs230 during RBC emergence (Fig. 4B). Consistent with the findings presented in earlier reports (3), there was no change in the production or release of the 47-kDa form of Pfs230 following E64d treatment. These data suggest that the effects of E64d treatment are due primarily to cysteine protease inhibition and not to generalized toxicity.
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FIG. 3. Gametogenesis following E64d treatment. Mature gametocytes (G'cytes) of strain 3D7 were incubated for 1 h with E64d or an equivalent volume of DMSO. The gametocytes were then pelleted and gametogenesis was induced by adding an equal volume of emergence medium. Giemsa-stained thin smears of samples obtained before the stimulus (preemergence) and 15 min after the stimulus (postemergence) are shown, as are bright-field images of the exflagellation centers that were observed 15 to 30 min after the stimulus. Arrows indicate the exflagellating male parasite(s) in the exflagellation (Exflag) center.
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2 kDa larger than the 47-kDa form, was present in the same samples that contained the 35-kDa fragment and was absent from the samples that did not contain the 35-kDa fragment. This pattern could suggest that the 35-kDa form is a fragment of the 49-kDa form and that the extent of further processing of the 49-kDa form to the 35-kDa form varies between preparations of supernatants from emerged parasites. To evaluate whether accessibility to the target protease limited the effectiveness of the drugs, 0.001% saponin was added to permeabilize, but not solubilize, the RBC membrane. In the presence of 0.001% saponin, Mu-Leu-hPhe-FMK, but not the vinyl phenol sulfone derivative, Mu-Leu-hPhe-VSPh, inhibited Pfs230 processing (Fig. 4B). Pretreatment with 0.001% saponin also decreased the concentration of E64d required to inhibit Pfs230 processing to 10 µM but had no effect on gametogenesis or exflagellation. These findings demonstrate that both the inhibitor specificity and the accessibility of the protease(s) involved in Pfs230 processing and oocyst production are distinct from those observed for inhibition of hemoglobin digestion during asexual growth.
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None of the other more specific inhibitors that have been found to inhibit one or more of the P. falciparum falcipains, Mu-Leu-hPhe-FMK, Mu-Leu-hPhe-VSPh, or YA29, significantly reduced oocyst production or Pfs230 processing (Fig. 4). Lower concentrations of E64d also did not effectively inhibit oocyst production or the production of the 35-kDa form of Pfs230 in the absence of saponin (Fig. 1B and 4B). However, an increase in the permeability of the RBC without RBC disruption by addition of 0.001% saponin enhanced the abilities of both Mu-Leu-hPhe-FMK and E64d to inhibit Pfs230 processing. This suggests that there is limited accessibility to the target protease in intact gametocytes, which may contribute to the need for such high external drug concentrations. Accessibility could be a major difference between the targeting of proteases in the food vacuole, which is actively taking up material from the RBC, and the targeting of proteases located in other compartments in the parasite. Target protease access and specificity may be important factors to be considered in future drug optimization studies. As demonstrated by these findings, inhibition of the cysteine proteases involved in hemoglobin digestion has requirements different from those for the inhibition of the cysteine proteases involved in oocyst production.
The inability of Mu-Leu-hPhe-VSPh to inhibit Pfs230 processing even in the presence of saponin may also suggest that the target protease is less sensitive to Mu-Leu-hPhe-VSPh than Mu-Leu-hPhe-FMK or that an active form of Mu-Leu-hPhe-VSPh may not have access to the P. falciparum gametocyte compartment where processing takes place. The cysteine proteases involved in oocyst production and/or Pfs230 processing have not yet been identified. Falcipain 2A/B is an unlikely candidate, since the data presented here demonstrate that mature gametocytes lack falcipain 2A/B protein expression. Falcipain 1 may be involved, as its targeted disruption significantly reduces oocyst production; but E64d-induced inhibition is much more effective, suggesting that additional cysteine proteases are involved (8). Falcipain 3 is a possible candidate, as it is expressed at the appropriate time and location and its ability to cleave a fluorogenic substrate is 2 x 102 times more sensitive to inhibition by Mu-Leu-hPhe-FMK (5,850,000 ± 15,800 M1 s1) than by Mu-Leu-hPhe-VSPh (22,000 ± 1,420 M1 s1) (17). This differential sensitivity is consistent with the lack of an effect of Mu-Leu-hPhe-VSPh on Pfs230 processing even in the presence of 0.001% saponin. However, the involvement of other E64d-sensitive P. falciparum cysteine proteases remains a possibility.
The findings reported here, coupled with the findings of previous work demonstrating an important role of cysteine proteases in trophozoite growth, merozoite release, oocyst rupture, and sporozoite invasiveness, demonstrate the therapeutic potential of cysteine protease inhibitors to significantly reduce both the morbidity from malaria and the transmission of the malaria parasite (1, 4, 10, 23, 25, 28, 30, 34, 37). Identifying the proteases expressed in both the asexual and the sexual stages and their in vivo accessibilities to inhibitors is an important component of drug development. Previous work has implicated falcipains 2A/B and 3 in asexual hemoglobin digestion and, possibly, RBC emergence, and recombinant falcipains 2A and 3 have been used in a number of drug screening assays (6, 7, 11, 29, 31, 33, 34). The data from this study demonstrating that gametocytes express falcipain 3 and not falcipain 2A/B, coupled with the possibility that falcipain 3 could be essential for asexual growth, suggest that falcipain 3 is a prime drug target. Falcipain 1 has also been shown to be expressed by gametocytes and to play a role in oocyst production and therefore should also be included in drug development efforts (8). The differential effectiveness of the three additional falcipain inhibitors compounds tested here, Mu-Leu-hPhe-FMK, Mu-Leu-hPhe-VSPh, and YA29, on asexual growth and oocyst production highlights the importance of including the sexual stages in the evaluation of new therapeutic candidates.
In summary, this work indicates that cysteine proteases are important for sexual stage parasite function. The development of inhibitors that effectively target the asexual and the sexual stages has the potential to effectively block the morbidity caused by the malaria parasite as well as transmission of the malaria parasite.
We thank T. Zaya and A. Suri, Loyola University Chicago, and Marga van de Vegte-Bolmer, University of Nijmegen, for technical support; J. Heller, Loyola University Chicago, for critical reading of the manuscript; and M. Bogyo, D. Greenbaum, and P. Rosenthal, University California at San Francisco, for generously providing reagents.
Published ahead of print on 18 December 2006. ![]()
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